Package: NCutYX 0.1.1

NCutYX: Clustering of Omics Data of Multiple Types with a Multilayer Network Representation

Omics data come in different forms: gene expression, methylation, copy number, protein measurements and more. 'NCutYX' allows clustering of variables, of samples, and both variables and samples (biclustering), while incorporating the dependencies across multiple types of Omics data. (SJ Teran Hidalgo et al (2017), <doi:10.1186/s12864-017-3990-1>).

Authors:Sebastian J. Teran Hidalgo, Shuangge Ma, Ruofan Bie

NCutYX_0.1.1.tar.gz
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NCutYX.pdf |NCutYX.html✨
NCutYX/json (API)
NEWS

# Install 'NCutYX' in R:
install.packages('NCutYX', repos = c('https://seborinos.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/seborinos/ncutyx/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • brca.data.cna - Data on copy number aberrations from breast cancer patients.
  • brca.data.ge - Data on gene expression from breast cancer patients.
  • brca.data.rppa - Data on protein measurements from breast cancer patients.
  • cesc.data.cna - Data on copy number aberrations from cervical cancer patients.
  • cesc.data.ge - Data on gene expression from breast cancer patients.
  • cesc.data.rppa - Data on protein measurements from cervical cancer patients.

On CRAN:

c-plus-pluscancer-genomicsclusteringcopy-number-variationdevtoolsgene-expressiongraph-algorithmsgraph-cutgraphsproteinsrcppcpp

4.48 score 4 stars 15 scripts 174 downloads 8 exports 17 dependencies

Last updated 7 years agofrom:f245c58a2e. Checks:1 OK, 10 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 04 2025
R-4.5-win-x86_64WARNINGFeb 04 2025
R-4.5-mac-x86_64WARNINGFeb 04 2025
R-4.5-mac-aarch64WARNINGFeb 04 2025
R-4.5-linux-x86_64WARNINGFeb 04 2025
R-4.4-win-x86_64WARNINGFeb 04 2025
R-4.4-mac-x86_64WARNINGFeb 04 2025
R-4.4-mac-aarch64WARNINGFeb 04 2025
R-4.3-win-x86_64WARNINGFeb 04 2025
R-4.3-mac-x86_64WARNINGFeb 04 2025
R-4.3-mac-aarch64WARNINGFeb 04 2025

Exports:ancutawncutawncut.selectionErrorRatemlbncutmuncutncutpwncut

Dependencies:codetoolsdotCall64fieldsforeachglmnetiteratorslatticemapsMASSMatrixmvtnormRcppRcppEigenshapespamsurvivalviridisLite

The NCutYX package

Sebastian Jose Teran Hidalgo

Rendered frommy-vignette.Rmdusingknitr::rmarkdownon Feb 04 2025.

Last update: 2018-02-07
Started: 2018-02-06